Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs150097723 chr2:118683279 G/A 1.6E-5 178 25.17 30.93 11.65 KM Plot
PCPG rs150100638 chr7:33698283 C/T 1.26E-7 176 25.17 25.43 19.87 KM Plot
PCPG rs150291879 chr2:242559719 G/A 2.92E-5 175 25.87 26.47 20.28 KM Plot
PCPG rs1503041 chr17:50294496 A/G 6.08E-5 178 25.67 27.95 14.47 KM Plot
PCPG rs1503042 chr17:50294376 C/T 6.66E-5 177 25.77 27.95 14.47 KM Plot
PCPG rs150331379 chr7:105163809 C/T 5.36E-5 177 20.2 30.45 2.28 KM Plot
PCPG rs150528227 chr20:5996831 A/AG 0 178 25.47 23.53 2.93 KM Plot
PCPG rs150638279 chr3:53426450 T/TAG 0.000209 176 25.28 31.9 26.73 KM Plot
PCPG rs150763895 chr8:53841491 T/TCAAA 0.000414 174 24.47 27.2 6.1 KM Plot
PCPG rs150842083 chr7:105162366 GACC/G 5.12E-5 178 20.2 29.43 2.28 KM Plot
PCPG rs150856057 chr10:69599615 G/T 0 173 25.87 18.2 2.28 KM Plot
PCPG rs150931789 chr12:56678335 T/C 9.63E-8 178 25.35 27.33 0.8 KM Plot
PCPG rs150955176 chr12:56706421 T/C 1.01E-7 177 25.35 29.13 0.8 KM Plot
PCPG rs151105710 chr3:136125678 G/GATTAAAGA 4.45E-5 172 25.27 28.3 24.1 KM Plot
PCPG rs151131396 chr10:102308822 C/T 9.39E-6 170 24.1 28.93 25.17 KM Plot